Can I run a local BLAST search again multiple blast databases simultaneously?
from: https://secure.clcbio.com/helpspot/index.php?pg=kb.page&id=113
Can I run a local BLAST search again multiple blast databases simultaneously? (blast, blastn, blastp, blastx, serveral databases)
By default, you will be offered single BLAST databases to search via the CLC Workbench BLAST interface.
By creating a simple text file outside the Workbench, and saving it the appropriate location, you can search multiple databases in a single search. To do this:
1) Create a text file and name it with the suffix .nal if your databases were created from nucleotide sequences, or the suffix .pal if your databases were created from peptide sequences.
Attached is a file showing the type of format this file should take. Just replace the names of the databases in that file (which are in quotes), with the names of databases you wish to use. You can add as many databases to that list as you like, just as long as you keep the same type of formatting as in the example file.
2) Put this file into the same folder on your system as your databases are stored in.
Please note that steps 1 and 2 are done outside the Workbench.
Now, when you go to run a search using your Workbench, one of the databases offered to you for blastn, blastx or tblastx should be the same name of the .nal file you created (but without the .nal suffix). If you run a blastp or tblastx search, then one of the databases offered to you should have the same name as the .pal file you created (but without the .pal suffix).
#
# Alias file created 11/21/2011 16:25:58
#
TITLE My bunch of databases
DBLIST "bigstaticdatabase" "smalldynamicdatabase"
Can I run a local BLAST search again multiple blast databases simultaneously?的更多相关文章
- Linux下BLAST+的本地化(BLAST 2.2.29+)
链接:http://blog.sciencenet.cn/home.php?mod=space&uid=830496&do=blog&quickforward=1&id ...
- 安装openssl 扩展的时候出现Cannot find config.m4. Make sure that you run '/usr/local/php/bin/phpize' in the top level source directory of the module的解决方法
进入php源码包目录:cd /usr/local/php-5.6.25/ext/openssl 执行命令: cp ./config0.m4 ./config.m4 即可
- Cannot find config.m4. Make sure that you run '/usr/local/php/bin/phpize' in the top level source directory of the module的 解决方法
cp /php-7.1.22/ext/openssl/config0.m4 /usr/local/php/bin/config.m4
- 构建NCBI本地BLAST数据库 (NR NT等) | blastx/diamond使用方法 | blast构建索引 | makeblastdb
参考链接: FTP README 如何下载 NCBI NR NT数据库? 下载blast:ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+ 先了解 ...
- Running command-line BLAST
Ubuntu安装BLAST 2014-02-09 10:45:03| 分类: Linux/Ubuntu|举报|字号 订阅 下载LOFTER我的照片书 | very easy! su ...
- BLAST - 序列数据库搜索
我生信入门,老师就要求我学好blast比对,说得也确实是很有道理,是个人都知道比对是最基本的东西,现在再想想那老师的建议,也只能呵呵一笑. 北大生物信息公开课有一章专门讲得序列数据库搜索,可以好好看看 ...
- Blast使用详解
Blast,全称Basic Local Alignment Search Tool,即"基于局部比对算法的搜索工具",由Altschul等人于1990年发布.Blast能够实现比较 ...
- 关于生物项目上的blast和viroblast
最近要做一个跟生物有关的项目,隔行如隔山呀,好多工具以前都没听过,blast分到我头上啦,查查,查查 BLAST (Basic Local Alignment Search Tool)是一套在蛋白质数 ...
- Blast 如何使用Blast+(Linux)转载
下载数据 #此处下载对应物种的数据库ftp://ftp.ncbi.nih.gov/genomes/,下载fna格式的即可 wget ftp://ftp.ncbi.nih.gov/genomes/A ...
随机推荐
- js 正则表达式 取反
http://www.w3school.com.cn/jsref/jsref_obj_regexp.asp 以匹配中文为例 const test_value = '李钊鸿' if (/[^\u4e00 ...
- mysql中去重复记录
Distinct 这个只能放在查询语句的最前面 参考 : https://www.cnblogs.com/lushilin/p/6187743.html
- 不需要Root即可Hook别人APP的方法
*:first-child { margin-top: 0 !important; } body > *:last-child { margin-bottom: 0 !important; } ...
- SpringBoot启动流程分析(五):SpringBoot自动装配原理实现
SpringBoot系列文章简介 SpringBoot源码阅读辅助篇: Spring IoC容器与应用上下文的设计与实现 SpringBoot启动流程源码分析: SpringBoot启动流程分析(一) ...
- 《TomCat与Java Web开发技术详解》(第二版) 第六章节的学习总结 ---- JSP技术
第六章主要介绍了JSP的相关知识. 1.JSP:是通过在HTML文件中加入java程序片段(Java Scriptlet)和JSP标记,就构成了JSP文件.JSP实质上是Servlet.JSP的API ...
- 【转】【Mac系统】之Python版本切换、谷歌浏览器取消自动升级
都是很有用的文章,本文都是转载文章,以便后续查阅: Mac Chrome浏览器取消自动升级(看这一篇就够了) <Mac修改默认python版本> <mac设置python版本切换,和 ...
- 嵌入式开发之davinci--- 8148/8168/8127 中的High-DefinitionVideo Processing Subsystem (HDVPSS)
High-DefinitionVideo Processing Subsystem (HDVPSS) 这一章介绍了高清视频处理子系统(HDVPSS). 2.1导论 2.1.1 简介 HDVPSS 使用 ...
- XtraBackup备份mysql5.1.73
一.基础介绍 mysql5.1在源码中配备了两个版本的innodb存储引擎源码:innobase和innodb_plugin,编译安装的时候可以通过参数--with-plugins=innobase, ...
- solr原理
1.solr原理: 我本人的理解:solr是为解决高性能的全文索引而出现的,它将用户输入的关键字进行智能分解,分解成一个个词,过滤掉一些多余的停词及空格等,比如,“在”.“里面”.“也”.“的”.“它 ...
- Labview新建项目步骤
打开Labview软件,点击工具栏中文件选项卡,如图所示. 2 点击新建一个空白项目. 3 此时为未命名项目,按下Ctrl+S保存项目到自己指定的目录并完成命名. 4 如图示在我的电脑上点击右键,新建 ...