Can I run a local BLAST search again multiple blast databases simultaneously?
from: https://secure.clcbio.com/helpspot/index.php?pg=kb.page&id=113
Can I run a local BLAST search again multiple blast databases simultaneously? (blast, blastn, blastp, blastx, serveral databases)
By default, you will be offered single BLAST databases to search via the CLC Workbench BLAST interface.
By creating a simple text file outside the Workbench, and saving it the appropriate location, you can search multiple databases in a single search. To do this:
1) Create a text file and name it with the suffix .nal if your databases were created from nucleotide sequences, or the suffix .pal if your databases were created from peptide sequences.
Attached is a file showing the type of format this file should take. Just replace the names of the databases in that file (which are in quotes), with the names of databases you wish to use. You can add as many databases to that list as you like, just as long as you keep the same type of formatting as in the example file.
2) Put this file into the same folder on your system as your databases are stored in.
Please note that steps 1 and 2 are done outside the Workbench.
Now, when you go to run a search using your Workbench, one of the databases offered to you for blastn, blastx or tblastx should be the same name of the .nal file you created (but without the .nal suffix). If you run a blastp or tblastx search, then one of the databases offered to you should have the same name as the .pal file you created (but without the .pal suffix).
#
# Alias file created 11/21/2011 16:25:58
#
TITLE My bunch of databases
DBLIST "bigstaticdatabase" "smalldynamicdatabase"
Can I run a local BLAST search again multiple blast databases simultaneously?的更多相关文章
- Linux下BLAST+的本地化(BLAST 2.2.29+)
链接:http://blog.sciencenet.cn/home.php?mod=space&uid=830496&do=blog&quickforward=1&id ...
- 安装openssl 扩展的时候出现Cannot find config.m4. Make sure that you run '/usr/local/php/bin/phpize' in the top level source directory of the module的解决方法
进入php源码包目录:cd /usr/local/php-5.6.25/ext/openssl 执行命令: cp ./config0.m4 ./config.m4 即可
- Cannot find config.m4. Make sure that you run '/usr/local/php/bin/phpize' in the top level source directory of the module的 解决方法
cp /php-7.1.22/ext/openssl/config0.m4 /usr/local/php/bin/config.m4
- 构建NCBI本地BLAST数据库 (NR NT等) | blastx/diamond使用方法 | blast构建索引 | makeblastdb
参考链接: FTP README 如何下载 NCBI NR NT数据库? 下载blast:ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+ 先了解 ...
- Running command-line BLAST
Ubuntu安装BLAST 2014-02-09 10:45:03| 分类: Linux/Ubuntu|举报|字号 订阅 下载LOFTER我的照片书 | very easy! su ...
- BLAST - 序列数据库搜索
我生信入门,老师就要求我学好blast比对,说得也确实是很有道理,是个人都知道比对是最基本的东西,现在再想想那老师的建议,也只能呵呵一笑. 北大生物信息公开课有一章专门讲得序列数据库搜索,可以好好看看 ...
- Blast使用详解
Blast,全称Basic Local Alignment Search Tool,即"基于局部比对算法的搜索工具",由Altschul等人于1990年发布.Blast能够实现比较 ...
- 关于生物项目上的blast和viroblast
最近要做一个跟生物有关的项目,隔行如隔山呀,好多工具以前都没听过,blast分到我头上啦,查查,查查 BLAST (Basic Local Alignment Search Tool)是一套在蛋白质数 ...
- Blast 如何使用Blast+(Linux)转载
下载数据 #此处下载对应物种的数据库ftp://ftp.ncbi.nih.gov/genomes/,下载fna格式的即可 wget ftp://ftp.ncbi.nih.gov/genomes/A ...
随机推荐
- Windows2008RC2 IIS配置php执行环境
1:下载一个php manager,安装.打开IIS管理器后,点击计算机,就能够看到右边PHPManager 静静地躺在那儿了.双击PHPManager 后我们就能够開始对PHP进行配置了. 2 ...
- tony_update yum
更改方法是这样的 在 /etc/yum.repos.d 下 1 wget http://mirrors.163.com/.help/CentOS6-Base-163.repo 2 #mv Cen ...
- Spring学习一----------Spring概况
© 版权声明:本文为博主原创文章,转载请注明出处 Spring概况 Spring是为了解决企业应用开发的复杂性而创建的. Spring是一种轻量级的控制反转(IOC)和面向切面(AOP)的容器框架. ...
- [LeetCode]Palindrome Number 推断二进制和十进制是否为回文
class Solution { public: bool isPalindrome2(int x) {//二进制 int num=1,len=1,t=x>>1; while(t){ nu ...
- PorterDuffXferMode不对的真正原因PorterDuffXferMode深入试验)
菜鸡wing遇敌PorterDuffXferMode,不料过于轻敌,应战吃力. 随后与其大战三天三夜.三百余回合不分胜负. 幸得 @咪咪控 相助,侥幸获胜. keyword:PorterDuffXfe ...
- 安装SQLserver 2014(For AlwaysOn)
SQLserver 2014 AlwaysOn在SQLserver 2012的基础之上,进行了非常大程度的添加.如能够通过"加入 Azure 副本向导"简化了用于 AlwaysOn ...
- IE下object元素遮挡div表单
目前遇到这样的一个问题: 我用ActiveX插件做了一个C#的播放器,要将这个插件放到web浏览器中,然后可以通过前台页面来控制视频的播放,暂停还有回放,这个时候发现object的onclick事件无 ...
- 从零开始学android -- CilpDrawable 徐徐展开的风景
话不多说上图 实现简单利用了这个ClipDrawable clip.xml <?xml version="1.0" encoding="utf-8"?&g ...
- solr6.5的分词
1.配置solr6.5自带中文分词.复制/usr/local/solr/contrib/analysis-extras/lucene-libs/lucene-analyzers-smartcn-6.5 ...
- poj2367
Genealogical tree Time Limit: 1000MS Memory Limit: 65536K Total Submissions: 4420 Accepted: 2933 ...