from: https://secure.clcbio.com/helpspot/index.php?pg=kb.page&id=113

Can I run a local BLAST search again multiple blast databases simultaneously? (blast, blastn, blastp, blastx, serveral databases)
By default, you will be offered single BLAST databases to search via the CLC Workbench BLAST interface.

By creating a simple text file outside the Workbench, and saving it the appropriate location, you can search multiple databases in a single search. To do this:

1) Create a text file and name it with the suffix .nal if your databases were created from nucleotide sequences, or the suffix .pal if your databases were created from peptide sequences.

Attached is a file showing the type of format this file should take. Just replace the names of the databases in that file (which are in quotes), with the names of databases you wish to use. You can add as many databases to that list as you like, just as long as you keep the same type of formatting as in the example file.

2) Put this file into the same folder on your system as your databases are stored in.

Please note that steps 1 and 2 are done outside the Workbench.

Now, when you go to run a search using your Workbench, one of the databases offered to you for blastn, blastx or tblastx should be the same name of the .nal file you created (but without the .nal suffix). If you run a blastp or tblastx search, then one of the databases offered to you should have the same name as the .pal file you created (but without the .pal suffix).

example.nal

#
# Alias file created 11/21/2011 16:25:58
#
TITLE My bunch of databases
DBLIST "bigstaticdatabase" "smalldynamicdatabase"

Can I run a local BLAST search again multiple blast databases simultaneously?的更多相关文章

  1. Linux下BLAST+的本地化(BLAST 2.2.29+)

    链接:http://blog.sciencenet.cn/home.php?mod=space&uid=830496&do=blog&quickforward=1&id ...

  2. 安装openssl 扩展的时候出现Cannot find config.m4. Make sure that you run '/usr/local/php/bin/phpize' in the top level source directory of the module的解决方法

    进入php源码包目录:cd /usr/local/php-5.6.25/ext/openssl 执行命令:  cp ./config0.m4 ./config.m4 即可

  3. Cannot find config.m4. Make sure that you run '/usr/local/php/bin/phpize' in the top level source directory of the module的 解决方法

    cp /php-7.1.22/ext/openssl/config0.m4 /usr/local/php/bin/config.m4

  4. 构建NCBI本地BLAST数据库 (NR NT等) | blastx/diamond使用方法 | blast构建索引 | makeblastdb

    参考链接: FTP README 如何下载 NCBI NR NT数据库? 下载blast:ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+ 先了解 ...

  5. Running command-line BLAST

    Ubuntu安装BLAST 2014-02-09 10:45:03|  分类: Linux/Ubuntu|举报|字号 订阅     下载LOFTER我的照片书  |     very easy! su ...

  6. BLAST - 序列数据库搜索

    我生信入门,老师就要求我学好blast比对,说得也确实是很有道理,是个人都知道比对是最基本的东西,现在再想想那老师的建议,也只能呵呵一笑. 北大生物信息公开课有一章专门讲得序列数据库搜索,可以好好看看 ...

  7. Blast使用详解

    Blast,全称Basic Local Alignment Search Tool,即"基于局部比对算法的搜索工具",由Altschul等人于1990年发布.Blast能够实现比较 ...

  8. 关于生物项目上的blast和viroblast

    最近要做一个跟生物有关的项目,隔行如隔山呀,好多工具以前都没听过,blast分到我头上啦,查查,查查 BLAST (Basic Local Alignment Search Tool)是一套在蛋白质数 ...

  9. Blast 如何使用Blast+(Linux)转载

    下载数据 #此处下载对应物种的数据库ftp://ftp.ncbi.nih.gov/genomes/,下载fna格式的即可   wget ftp://ftp.ncbi.nih.gov/genomes/A ...

随机推荐

  1. 计算机图形学(二)输出图元_6_OpenGL曲线函数_2_中点画圆算法

    中点画圆算法        如同光栅画线算法,我们在每一个步中以单位间隔取样并确定离指定圆近期的像素位置.对于给定半径r和屏幕中心(xc,yc),能够先使用算法计算圆心在坐标原点(0, 0)的圆的像素 ...

  2. JSTL JSP页面推断某个cookie的值和读取值....

    <c:if test="${cookie['woshop'].value eq '1'}">                 <div>           ...

  3. udp广播和多播

    使用UDP协议进行信息的传输之前不需要建立链接, 客户端向服务器发送信息时,客户端只需要给出服务器的ip地址和端口号,可以发送信息.至于服务器端是否存在,是否能够收到该报文,客户端根本不用管. 广播( ...

  4. openWRT自学---对官方的开发指导文档的解读和理解 记录2:如何控制内核模块的编译

    openwrt对于kernel module的处理分两类:随内核主线而来的kernel module 和 其他作为独立project的kernel module.而这两种,openwrt将采用相同的模 ...

  5. Django下实现HelloWorld

    我的实现工具:window10 在window10 下面,实现第一个Django的HelloWorld项目. 1.创建一个项目 确保你的电脑上装了python和Django.我的是在python2.7 ...

  6. linux 改动时间和日期date

    查看日期和时间 date 改动日期 date -s 月/日/年 date -s 08/15/2015 改动时间 date -s 09:29:33 写入CMOS sudo clock -w 利用ssh同 ...

  7. 生成n个元素的全排列 C实现

    近期在准备复习算法设计的考试,下边记录一些,看笔记时突然想到的解法. 问题是这种 用递归实现 n 个元素的全排列. 当时老师给出的解答是 假定第i个元素 ri 放在首位,于是 f(r1,r2,-,rn ...

  8. PopupWindowFromBottom 从底部弹出popupwindow

    自定义PopupWindowFromBottom public class PopupWindowFromBottom extends PopupWindow { public PopupWindow ...

  9. 线性同余方程模板( A+C*x=B(mod D) )

    void extendgcd(long long a,long long b,long long &d,long long &x,long long &y) { ){d=a;x ...

  10. Spring 定时作业

    Spring定时任务的几种实现   近日项目开发中需要执行一些定时任务,比如需要在每天凌晨时候,分析一次前一天的日志信息,借此机会整理了一下定时任务的几种实现方式,由于项目采用spring框架,所以我 ...