Eclipse Mark Occurrences
Mark Occurrences
The Mark Occurrences feature enables you to see where an element is referenced by simply clicking on the element in the editor.
When the Mark Occurrences feature is enabled, all occurrences of the element within the active file will be highlighted,
and indicators will be displayed in the annotations bar (to the right of the editor).
In addition, hovering over the element will cause a tooltip to be displayed with the location of all references of the element,
including occurrences of the element in other files.

Occurrences can be of 2 types -
“Write Occurrence” (for occurrences that are in a write mode) or
“Read Occurrence” (for occurrences that are in a read mode).
These will be highlighted in different colors according to the setting configured for PHP elements 'read' and 'write' occurrences
in the Annotations preferences page (Window | Preferences | General | Editors | Text Editors | Preferences).
Here you can also configure the indicators used in the vertical ruler/marker bar (to the left of the editor)
and the annnotations bar (to the right of the editor).
The types of elements whose occurrences will be highlighted can be configured in the
Mark Occurrences preferences page (Window | Preferences | PHP | Editor | Mark Occurrences ).
By default, the following types of elements are marked:
Method Exit - Exit points (throws / return / end of flow) of a method will be marked
Break / Continue - Scope (for, foreach, while, do-while or switch structure) of a break / continue statement will be marked
Local variables
Global variables
Parameters
Functions
Methods
Fields
Class Constants
Constants (defined)
Class/Interface
HTML Tags
You'll want to change the "Occurrences" and "Write Occurrences" colors.
This can be done in the Annotations menu, which is located —
as Colin said — in the Preferences menu under the path
General > Editors > Text Editors > Annotations
If you have an occurrence marked in the overview ruler (the column to the right of the scrollbar),
you can open the Annotations menu directly by right-clicking on the occurrence and selecting Preferences from the context menu.
The color of "occurrences" is used for instances where the variable is being read, but not modified,
in the code (e.g. k in if(k > 1)).
The color of "write occurrences" is used where the variable gets modified/written to
in the code (e.g. k in k = k + 1).

If you want to change the default highlight colours you can do so in the
Preferences > General > Editors > Text Editors > Annotations
– look for“Occurrence annotation” and “Write occurrences”.

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