A single-cell molecular map of mouse gastrulation and early organogenesis

Here we report the transcriptional profiles of 116,312 single cells from mouse embryos collected at nine sequential time points ranging from 6.5 to 8.5 days post-fertilization.

另一篇的姐妹篇,本文测了E6.5到E8.5的老鼠胚胎发育的数据。

数据下载:

Data availability
Raw sequencing data are available on ArrayExpress with the following accessions: Atlas: E-MTAB-6967; Smart-seq2 endothelial cells: E-MTAB-6970; Tal1−/− chimaeras: E-MTAB-7325; wild-type chimaeras: E-MTAB-7324. Processed data may be downloaded following the instructions at https://github.com/MarioniLab/EmbryoTimecourse2018. Gene Expression Omnibus (GEO) accession GSE87038 was used to support the annotation of myeloid cells (see Methods). All code is available upon request, and at https://github.com/MarioniLab/EmbryoTimecourse2018. Our atlas can be explored at https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/. All other data are available from the corresponding authors on reasonable request.

待续~

文献阅读 | A single-cell molecular map of mouse gastrulation and early organogenesis的更多相关文章

  1. 文献阅读 | Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments

    资源: sci-hub paper CellBench package - github CellBench_data - code for the paper 现在单细胞领域的突出问题就是工具过多, ...

  2. 文献阅读 | The single-cell transcriptional landscape of mammalian organogenesis | 器官形成 | 单细胞转录组

    The single-cell transcriptional landscape of mammalian organogenesis 老板已经提了无数遍的文章,确实很nb,这个工作是之前我们无法想 ...

  3. Advances in Single Cell Genomics to Study Brain Cell Types | 会议概览

    单细胞在脑科学方面的应用 Session 1: Deciphering the Cellular Landscape of the Brain Using Single Cell Transcript ...

  4. 文献阅读笔记——group sparsity and geometry constrained dictionary

    周五实验室有同学报告了ICCV2013的一篇论文group sparsity and geometry constrained dictionary learning for action recog ...

  5. 单细胞参考文献 single cell

    许多分析软件 : https://github.com/seandavi/awesome-single-cell#software-packages Smart-seq.CEL-seq.SCRB-se ...

  6. 单细胞测序技术(single cell sequencing)

    单细胞测序技术(single cell sequencing) 2018-03-02 11:02   来源: 一呼百诺  点击次数:6587关键词:   前言 单细胞生物学最近几年是非常热门的研究方向 ...

  7. Analysis of single cell RNA-seq data(单细胞终极课程)

    业界良心啊,开源的单细胞课程. 随便看了几章,课程写得非常用心,非常适合新手. 课程地址:Analysis of single cell RNA-seq data 源码地址:hemberg-lab/s ...

  8. Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing

    Title:  Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing 课题的目的 ...

  9. Single Cell Genomics Day: A Practical Workshop

    干货满满! Single Cell Genomics Day: A Practical Workshop

随机推荐

  1. 使用SAP Cloud Application Programming模型开发OData的一个实际例子

    刚刚过去的SAP TechEd上,SAP CTO Juergen Mueller向外界传递了一个重要的信息:身处云时代大环境下的SAP从业者,在SAP云平台上该如何选择适合自己的开发方式? Juerg ...

  2. Hadoop1.x与Hadoop2.x之间的差异

    一.Hadoop2.x产生背景 1.Hadoop1.x中的HDFS和MapReduce在高可用.扩展性等方面存在问题. 2.HDFS存在的问题 1.NameNode单点故障,难以应用于在线场景. 2. ...

  3. 【AIX】3004-314 Password was recently used and is not valid for reuse

    [AIX]3004-314 Password was recently used and is not valid for reuse   一.1  BLOG文档结构图     一.2  前言部分   ...

  4. springboot自定义CORS&XSS拦截器

    springboot 项目前后端接口,防止xss攻击以及跨域问题解决 1.启动类添加注解 @ServletComponentScan 2.cors的拦截类 package com.longfor.hr ...

  5. Linux命令——chgrp、chown、chmod

    简介 这三个命令都用于更改文件permission(权限).即下图红框位置 除此之外还有个“连结”,那个指的是硬链接,不是软连接.FS使用inode区分不同文件,而目录树使用文件名区分不同文件,因此可 ...

  6. OpenStack核心组件-neutron网络服务

    1. neutron 介绍 1.1 Neutron 概述 传统的网络管理方式很大程度上依赖于管理员手工配置和维护各种网络硬件设备:而云环境下的网络已经变得非常复杂,特别是在多租户场景里,用户随时都可能 ...

  7. poj1734 Sightseeing trip(Floyd求无向图最小环)

    #include <iostream> #include <cstring> #include <cstdio> #include <algorithm> ...

  8. github配置SSH proxy

    在windows users 用户目录下生成config文件,如在C:\Users\your_user_name\.ssh 目录下,找到config文件,如果没有新建一个,写入如下内容: Host g ...

  9. axio 请求中参数是数组

    前言 最近在做 Vue 项目中,Get 请求中有的参数是数组,传 JSON 字符串是没有问题的,但是直接传数组就一直报错,有问题. 参数后面无故加了 [],例如:UserIds 变成 UserIds[ ...

  10. nginx安装记录

    1.下载nginx http://nginx.org/en/download.html         下载稳定版本,以nginx/Windows-1.12.2为例,直接下载 nginx-1.12.2 ...