ubuntu 安装 RPostgreSQL 库

其实大家在Linux 的R 中安装其他库，完全可以使用R 自带的安装方式，只是这个 RPostgreSQL 库需要用到 postgresql 的lib 库与include 头文件，所以才有若干个步骤去准备。

我自己的做法是这样的，首先在网上下载一个 RPostgreSQL 的源码包，源码下载地址：https://cran.r-project.org/src/contrib/RPostgreSQL_0.4-1.tar.gz ，解压源码包后，里面会有一个 configure 的文件，我们可以通过这个configure 文件来检测我们的环境是否已经可以安装 RPostgreSQL 库了。

例如我自己在检测时，发现我的环境了没有 postgresql 的lib 和include 相关文件，开始时的错误信息

checking for "/libpq-fe.h"... no

其实我自己的环境中，是有postgresql 的相关文件的，只是我不是通过 apt-get 或者是源码安装的方式来部署我自己的 postgresql 环境而已。

我的postgresql HOME 目录在 /home/sdbadmin/ssql，而且也能在ssql 的目录中看到 lib 和 include 目录，所以我自己就直接将文件拷贝到 /usr 路径下了（需要root 权限）

cp -rf /home/sdbadmin/ssql/include/* /usr/include/
cp -rf /home/sdbadmin/ssql/lib/* /usr/lib/

再来执行configure 文件，就能够通过了

root@chen:~/tmp/RPostgreSQL# ./configure
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for pg_config... no
configure: checking for PostgreSQL header files
configure: Checking include /usr/include.
configure: Checking lib /usr/lib.
checking for "/usr/include/libpq-fe.h"... yes
configure: creating ./config.status
config.status: creating src/Makevars

然后我们就能放心在R 中安装 RPostgreSQL 库了

直接通过 Shell 进入R 环境，进入方式 就是大写 的R

执行安装命令

install.packages('RPostgreSQL')

它会让你选在一个下载方式，我自己随便选了个 2

--- Please select a CRAN mirror for use in this session ---
HTTPS CRAN mirror 

 : -Cloud [https]                : Algeria [https]
 : Austria [https]                : Belgium (Ghent) [https]
 : Brazil (SP ) [https]          : Canada (MB) [https]
 : Chile [https]                  : China (Beijing ) [https]
 : Colombia (Cali) [https]       : France (Lyon ) [https]
: France (Lyon ) [https]       : France (Paris ) [https]
: Germany (Münster) [https]     : Iceland [https]
: Italy (Padua) [https]         : Japan (Tokyo) [https]
: Malaysia [https]              : Mexico (Mexico City) [https]
: New Zealand [https]           : Russia (Moscow) [https]
: Serbia [https]                : Spain (A Coruña) [https]
: Spain (Madrid) [https]        : Switzerland [https]
: UK (Bristol) [https]          : UK (Cambridge) [https]
: USA (CA ) [https]            : USA (KS) [https]
: USA (MI ) [https]            : USA (TN) [https]
: USA (TX) [https]              : USA (WA) [https]
: (HTTP mirrors) 

Selection: 2

它就开始扒拉扒拉 开始下载了

also installing the dependency ‘DBI’

trying URL 'https://cran.usthb.dz/src/contrib/DBI_0.4-1.tar.gz'
Content type 'application/x-gzip' length  bytes ( KB)
==================================================
downloaded  KB

trying URL 'https://cran.usthb.dz/src/contrib/RPostgreSQL_0.4-1.tar.gz'
Content type 'application/x-gzip' length  bytes ( KB)
==================================================
downloaded  KB

* installing *source* package ‘DBI’ ...
** package ‘DBI’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DBI)
* installing *source* package ‘RPostgreSQL’ ...
** package ‘RPostgreSQL’ successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for pg_config... no
configure: checking for PostgreSQL header files
configure: Checking include /usr/include.
configure: Checking lib /usr/lib.
checking for "/usr/include/libpq-fe.h"... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c RS-DBI.c -o RS-DBI.o
gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c RS-PQescape.c -o RS-PQescape.o
gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c RS-PostgreSQL.c -o RS-PostgreSQL.o
RS-PostgreSQL.c: In function ‘RS_PostgreSQL_createDataMappings’:
RS-PostgreSQL.c::: warning: passing argument  of ‘Rf_protect’ from incompatible pointer type [enabled by default]
/usr/local/lib/R/include/Rinternals.h::: note: expected ‘SEXP’ but argument is of type ‘struct RS_DBI_fields *’
gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c RS-pgsql-copy.c -o RS-pgsql-copy.o
gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c RS-pgsql-getResult.c -o RS-pgsql-getResult.o
gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c RS-pgsql-pqexec.c -o RS-pgsql-pqexec.o
gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG -I/usr/include -I/usr/local/include    -fpic  -g -O2  -c RS-pgsql-pqexecparams.c -o RS-pgsql-pqexecparams.o
gcc -std=gnu99 -shared -L/usr/local/lib -o RPostgreSQL.so RS-DBI.o RS-PQescape.o RS-PostgreSQL.o RS-pgsql-copy.o RS-pgsql-getResult.o RS-pgsql-pqexec.o RS-pgsql-pqexecparams.o -L/usr/lib -lpq
installing to /usr/local/lib/R/library/RPostgreSQL/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘format’ from package ‘base’ in package ‘RPostgreSQL’
Creating a generic function for ‘print’ from package ‘base’ in package ‘RPostgreSQL’
Creating a generic function for ‘summary’ from package ‘base’ in package ‘RPostgreSQL’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RPostgreSQL)

The downloaded source packages are in
    ‘/tmp/Rtmp4P3XQb/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done

RPostgreSQL 安装好了之后，当然是先试试能不能工作了

执行如下命令

require(RPostgreSQL)
drv = dbDriver("PostgreSQL")
pgdb = dbConnect(drv, user="pgadmin", password="pgadmin",host="192.168.57.132", dbname="foo")

执行到 dbConnect 时，报错

Error in postgresqlNewConnection(drv, ...) :
  RS-DBI driver: (could not connect pgadmin@192.168.57.132 on dbname "foo"

细想，应该是postgresql 的访问权限问题，导致外来的客户端无法直接连接数据库

手工对postgresql 停服务，修改 postgresql 的配置参数，我自己的postgresql 环境，所有配置文件都在 pg_data 目录下，执行以下命令时，是在 /home/sdbadmin/ssql 目录下

  sed -i "s/#listen_addresses = 'localhost'/listen_addresses = '0.0.0.0'/g" pg_data/postgresql.conf ;
  linenum=$(cat -n pg_data/pg_hba.conf | grep "# IPv4 local connections:" | awk '{print $1}');
  let "linenum=linenum+1";varStr="host   all            all            0.0.0.0/0              trust";
  sed -i "${linenum} a${varStr}" pg_data/pg_hba.conf;

启动postgresql 服务

bin/postgres -D pg_data/ >> logfile >& &

再回过头来测试 RPostgreSQL 库

pgdb = dbConnect(drv, user="pgadmin", password="pgadmin",host="192.168.57.132", dbname="foo")

通过了，然后在里面查找数据

dbGetQuery(pgdb, "select * from t2")

成功返回记录

  name
  ttt

到这里就完全介绍完 RPostgreSQL 库如何安装和与 postgresql 进行对接，希望能够对大家有所帮助

参考博客：

http://blog.chinaunix.net/uid-14874549-id-3457872.html

http://www.01yun.com/dotnet/20130711/571315.html

http://stackoverflow.com/questions/22202141/installing-rpostgresql-on-linux

http://www.sequoiadb.com/cn/index.php?a=index&m=Files&cat_id=1432190716&edition_id=0