pindel及breandancer安装

1、安装pindel需要依赖htslib

https://github.com/samtools/htslib.git
mv htslib htslib1
autoheader     # If using configure, generate the header template...
autoconf       # ...and configure script (or use autoreconf to do both)
./configure    # Optional but recommended, for choosing extra functionality
make
make install prefix=/home/share/biosoft/htslib
rm -rf htslib1
export PATH=/home/share/biosoft/htslib/bin:$PATH

2、安装pindel

git clone https://github.com/genome/pindel.git
cd pindel
./install /home/share/biosoft/htslib
export PATH=/home/share/biosoft/pindel:$PATH

3、安装breakdance(彻底放弃，后续发现依赖的perl包太多，不会装)

git clone --recursive https://github.com/genome/breakdancer.git
breakdancer breakdancer1
cd breakdancer1
mkdir build
cd build
cmake .. -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=/data/share/biosoft/breakdancer
make
make install prefix=/data/share/biosoft/breakdancer
rm -rf breakdancer1