外显子分析弹错解决方案:Invalid command line: Cannot process the provided BAM/CRAM file(s) because they were not indexed.
出现这种问题说明bam/cram文件没有进行index.
Samtool能解决这个问题,以bam文件为例,输入以下命令行即可解决问题:
/path/to/your/samtools index file.bam
外显子分析弹错解决方案:Invalid command line: Cannot process the provided BAM/CRAM file(s) because they were not indexed.的更多相关文章
- 外显子分析弹错解决方案:Exception in thread "main" picard.PicardException: New reference sequence does not contain a matching contig for NC_007605
最近从公共数据库下载了一堆bam文件和reference 基因组文件,重新分析外显子流程时,跑出了“Exception in thread "main" picard.Picard ...
- 外显子分析报错解决方案bin field of BAM record does not equal value computed based on alignment start and end, and length of sequence to which read is aligned
以下链接给出了解决方案:https://gatkforums.broadinstitute.org/gatk/discussion/4290/sam-bin-field-error-for-the-g ...
- python安装locustio报错error: invalid command 'bdist_wheel'的解决方法
locust--scalable user load testing tool writen in Python(是用python写的.规模化.可扩展的测试性能的工具) 安装locustio需要的环境 ...
- Apache启动报错:Invalid command 'AuthType', perhaps misspelled or defined by a module not included in it
在apache配置文件里面加了AuthType PFApacheAgent,,结果重启apache的时候歇菜了,,总是报上面的错, <Directory />AllowOverride n ...
- Win7系统64位环境下使用Apache——安装Apache2.4时报错“Invalid command Order”问题的解决
之前在文章Win7系统64位环境下使用Apache--Apache2.4整合Tomcat与mod_jk提到了安装Apache2.4时有可能报错: Invalid command 'Order', pe ...
- IAR Build from the command line 环境变量设置
http://supp.iar.com/Support/?Note=47884 Technical Note 47884 Build from the command line The alterna ...
- Cookies with curl the command line tool
w https://curl.haxx.se/docs/http-cookies.html curl has a full cookie "engine" built in. If ...
- How to deploy a Delphi OSX project from the command line
Delphi has a well developed command line build process (via MSBuild) for Windows projects. After the ...
- 运行springboot项目报错 Error running 'ResourceApplication': Command line is too long. Shorten comma
方法1 IDEA 运行报错:Error running '***': Command line is too long 技术标签: IDEA Error running 'Test': Com ...
随机推荐
- hdu 1263 水果 结构的排序+sort自定义排序
水果 Time Limit: 2000/1000 MS (Java/Others) Memory Limit: 65536/32768 K (Java/Others)Total Submissi ...
- 对wordcount单词字母部分的修改
原始代码: int s; s = ch; switch (s) { case 'a':letter[0]++; break; case 'b':letter[1]++; break; case 'c' ...
- SqlDataAdapter简单介绍 (转)
From: http://blog.sobnb.com/u/92/5532.html 一.特点介绍 1.表示用于填充 DataSet 和更新 SQL Server 数据库的一组数据命令和一个数据库连 ...
- nginx gzip 以及 tcp 反向代理的 model
同事为了提高性能发给我一model 简单改了一下. 记录一下 #user nobody; worker_processes ; events { worker_connections ; } http ...
- Angular service定义服务
<!DOCTYPE html><html ng-app="myApp"><head lang="en"> <meta ...
- 关于ListBox在Grid中无法充满的问题
WPF布局的时候发现一个问题,ListBox放在Grid中的时候,老是无法充满整个Grid,但是查看代码也没有设置相关的属性,原来在设置ListBox之前首先要让ListBox的容器充满,然后List ...
- JavaScript从入门到精通
第一(基本语法) if(condition1){ expression1; }else if(condition2){ expression2; }else{ expression3; } switc ...
- Delphi学习技巧
我感觉学习最大的诀窍是, 尽快捕捉到设计者(Delphi VCL 的设计者.进而是 Windows 操作系统的设计者)的某些思路, 和大师的思路吻合了, 才能够融汇贯通, 同时从容使用它们的成果. 碰 ...
- MySQL在Read Uncommitted级别下写操作加X锁
很多文章认为MySQL在读未提交(Read Uncommitted)的隔离级别下,写操作是不加锁的,然而实际上并不是,在RU级别下,写操作加有X锁. 实践出真知 以前,我也认为RU隔离级别下,写操作不 ...
- Bootstrap排版——HTML元素的样式重定义
前面的话 Bootstrap对默认的HTML元素进行了CSS样式定义,使得各种基本结构套用出来的HTML页面更加美观.本文将详细介绍Bootstrap中排版相关的内容 标题 [h] HTML 中的所有 ...