Spark代码调优（一）

环境极其恶劣情况下：

import org.apache.spark.SparkContext

import org.apache.spark.rdd.RDD

import org.apache.spark.sql.{DataFrame, Row, SQLContext}

import org.apache.spark.sql.hive.HiveContext

val sqlContext = new HiveContext(sc)

val sql = sqlContext.sql("select * from ysylbs9 ").collect

中间发生报错：

cluster.YarnScheduler: Lost executor 2 on zdbdsps025.iccc.com: Container marked as failed: container_e55_1478671093534_0624_01_000003 on host: zdbdsps025.iccc.com. Exit status: 143. Diagnostics: Container killed on request. Exit code is 143

Container exited with a non-zero exit code 143

Killed by external signal

是因为yarn管理的某个节点掉了，所以spark将任务移至其他节点执行:

16/11/15 14:24:28 WARN scheduler.TaskSetManager: Lost task 224.0 in stage 0.0 (TID 224, zdbdsps025.iccc.com): ExecutorLostFailure (executor 2 exited caused by one of the running tasks) Reason: Container marked as failed: container_e55_1478671093534_0624_01_000003 on host: zdbdsps025.iccc.com. Exit status: 143. Diagnostics: Container killed on request. Exit code is 143

Container exited with a non-zero exit code 143

Killed by external signal

16/11/15 14:24:28 INFO cluster.YarnClientSchedulerBackend: Asked to remove non-existent executor 2

中间又报错：

16/11/15 14:30:43 WARN spark.HeartbeatReceiver: Removing executor 6 with no recent heartbeats: 133569 ms exceeds timeout 120000 ms

16/11/15 14:30:43 ERROR cluster.YarnScheduler: Lost executor 6 on zdbdsps027.iccc.com: Executor heartbeat timed out after 133569 ms

每个task 都超时了

16/11/15 14:30:43 WARN scheduler.TaskSetManager: Lost task 329.0 in stage 0.0 (TID 382, zdbdsps027.iccc.com): ExecutorLostFailure (executor 6 exited caused by one of the running tasks) Reason: Executor heartbeat timed out after 133569 ms

DAGScheduler发现Executor 6 也挂了，于是将executor移除

16/11/15 14:30:43 INFO scheduler.DAGScheduler: Executor lost: 6 (epoch 1)

16/11/15 14:30:43 INFO storage.BlockManagerMasterEndpoint: Trying to remove executor 6 from BlockManagerMaster.

16/11/15 14:30:43 INFO storage.BlockManagerMasterEndpoint: Removing block manager BlockManagerId(6, zdbdsps027.iccc.com, 38641)

16/11/15 14:30:43 INFO storage.BlockManagerMaster: Removed 6 successfully in removeExecutor

16/11/15 14:30:43 INFO cluster.YarnClientSchedulerBackend: Requesting to kill executor(s) 6

然后移至其他节点，随后又发现RPC出现问题

16/11/15 14:32:58 ERROR server.TransportRequestHandler: Error sending result RpcResponse{requestId=4735002570883429008, body=NioManagedBuffer{buf=java.nio.HeapByteBuffer[pos=0 lim=47 cap=47]}} to zdbdsps027.iccc.com/172.19.189.53:51057; closing connection

java.io.IOException: 断开的管道

at sun.nio.ch.FileDispatcherImpl.write0(Native Method)

at sun.nio.ch.SocketDispatcher.write(SocketDispatcher.java:47)

at sun.nio.ch.IOUtil.writeFromNativeBuffer(IOUtil.java:93)

Spark是移动计算而不是移动数据的，所以由于其他节点挂了，所以任务在数据不在的节点，再进行拉取，由于极端情况下，环境恶劣，通过namenode知道数据所在节点位置，spark依旧会去有问题的节点fetch数据，所以还会报错 再次kill掉，由于hadoop是备份三份数据的，spark通过会去其他节点拉取数据。随之一直发现只在一个节点完成task. 最终问题查找，yarn的节点挂了，

下面是部分代码调试：

import org.slf4j.{Logger, LoggerFactory}

import java.util.{Calendar, Date, GregorianCalendar}

import algorithm.DistanceCalculator

import org.apache.hadoop.hbase.{CellUtil, HBaseConfiguration}

import org.apache.hadoop.hbase.client.{HTable, Scan}

import org.apache.hadoop.hbase.mapreduce.TableInputFormat

import org.apache.hadoop.hbase.protobuf.ProtobufUtil

import org.apache.hadoop.hbase.util.{Base64, Bytes}

import org.apache.spark.rdd.RDD

import org.apache.spark.sql.DataFrame

import org.apache.spark.sql.hive.HiveContext

import org.apache.spark.{SparkConf, SparkContext}

import org.slf4j.{Logger, LoggerFactory}

import scala.collection.mutable.ArrayBuffer

case class LBS_STATIC_TABLE(LS_certifier_no: String,LS_location: String,LS_phone_no: String,time: String)

该case class 作为最终注册转换为hive表

val logger: Logger = LoggerFactory.getLogger(LbsCalculator.getClass)

//从hbase获取数据转换为RDD

def hbaseInit() = {

val tableName = "EVENT_LOG_LBS_HIS"

val conf = HBaseConfiguration.create()

// conf.addResource("hbase-site.xml ")

val HTable = new HTable(conf, tableName)

HTable

}

def tableInitByTime(sc : SparkContext,tablename:String,columns :String,fromdate: Date,todate:Date):RDD[(ImmutableBytesWritable,Result)] = {

val configuration = HBaseConfiguration.create()

//这里上生产注释掉，调试时可打开，因为提交yarn会自动加载yarn管理的hbase配置文件

configuration.addResource("hbase-site.xml")

configuration.set(TableInputFormat.INPUT_TABLE, tablename)

val scan = new Scan

//这里按timestrap进行过滤，比用scan过滤器要高效，因为用hbase的过滤器其实也是先scan全表再进行过滤的，效率很低。

scan.setTimeRange(fromdate.getTime,todate.getTime)

val column = columns.split(",")

for(columnName <- column){

scan.addColumn("f1".getBytes, columnName.getBytes)

}

val hbaseRDD = sc.newAPIHadoopRDD(configuration, classOf[TableInputFormat], classOf[org.apache.hadoop.hbase.io.ImmutableBytesWritable], classOf[org.apache.hadoop.hbase.client.Result])

System.out.println(hbaseRDD.count())

hbaseRDD

}

//这里写了一种过滤器方法，后续将所有hbase过滤器方法写成公共类

val filter: Filter = new RowFilter(CompareFilter.CompareOp.GREATER_OR_EQUAL, new SubstringComparator("20160830"))

scan.setFilter(filter)

//这里要注意，拿到的数据在1个partition中，在拿到后需要进行repartition,因为如果一个task能够承载比如1G的数据，那么将只有1个patition,所以要重新repatition加大后续计算的并行度。这里repatition的个数需要根据具体多少数据量，进行调整，后续测试完毕写成公共方法。通过Rdd map 转换为（身份证号，经纬度坐标，手机号码，时间）这里就将获取的数据repatition了

val transRDD = hbRDD.repartition(200).map{ p => {

val id =Bytes.toString(p._2.getValue("f1".getBytes, "LS_certifier_no".getBytes))

val loc = Bytes.toString(p._2.getValue("f1".getBytes, "LS_location".getBytes))

val phone = Bytes.toString(p._2.getValue("f1".getBytes, "LS_phone_no".getBytes))

val rowkey = Bytes.toString(p._2.getValue("f1".getBytes, "rowkey".getBytes))

val hour = rowkey.split("-")(2).substring(8,10)

(id,loc,phone,hour)

}

}

//这里进行了字段过滤，因为很多时候数据具有不完整性，会导致后续计算错误

val calculateRDD = transRDD.repartition(200).filter(_._1 != null).filter(_._2 != null).filter(_._3 != null).filter(_._4 !=null)

需要注意的是reduceByKey并不会在监控页面单独为其创建监控stage,所以你会发现与之前的map（filer）的stage中，同时监控中会发现已经进行了repartition

.reduceByKey(_ + _)

//进行hiveContext对象的创建，为后续进行表操作做准备。

val hiveSqlContext = HiveTableHelper.hiveTableInit(sc)

def hiveTableInit(sc:SparkContext): HiveContext ={

val sqlContext = new HiveContext(sc)

sqlContext

}

//传入之前数据分析过的结果，生成表

val hiveRDD = hRDD.map(p => LBS_STATIC_TABLE(p._1,p._2,p._3,p._4,p._5)

//创建DataFrame并以parquet格式保存为表。这里需要注意的是，尽量少的直接用hiveSqlContext.sql（）直接输入sql的形式，因为这样还会走spark自己的解析器。需要调用RDD的DataFrame API会加快数据处理速度。后续整理所有算子。

val hiveRDDSchema = hiveSqlContext.createDataFrame(hiveRDD)

val aaa = hiveRDDSchema.show(10)

hiveSqlContext.sql("drop table if exists " + hivetablename)

hiveRDDSchema.registerTempTable("LBS_STATIC_TABLE")

hiveRDDSchema.write.format("parquet").saveAsTable(hivetablename)