生信基础概念之unique reads VS multi-mapping reads

unique reads:在参考组上只有一个匹配点

multi-mapping reads:在参考组上有多个匹配点

下面是tophat的一个结果案例：

Reads:
          Input     :
           Mapped   :   (96.2% of input)
            of these:    ( 4.1%) have multiple alignments ( have >)
96.2% overall read mapping rate.

the quantity of unique reads  ：25159791-1027691=

the quantity of multi-mapping reads：1027691

1027691个multi-mapping reads 产生了多少个alignment？或者提起unique reads用于下步分析？

$samtools view accepted.bam|grep -v 'NH:i:1'|wc -l
$samtolls view accepted.bam|grep '\bNH:i:1\b'>accepted_unique.sam