Some of the bedtools (e.g., genomeCoverageBed,
complementBed, slopBed) need to know the size of the chromosomes for the
organism for which your BED files are based.

The way you do this for bedtools is to create a “genome” file, which simply lists the names of the chromosomes (or scaffolds, etc.) and their size (in basepairs).

Genome files must be tab-delimited and are structured as follows (this is an example for C. elegans):

chrI 15072421 chrII 15279323 ... chrX 17718854 chrM 13794

by freemao

FAFU.

free_mao@qq.com

genome file format的更多相关文章

  1. could not read symbols: File format not recognized

    arm-linux-gnueabi-readelf工具解决问题 编译一个32位平台的内核时,出现如下错误提示: libschw.a: could not read symbols: File form ...

  2. Java class file format specfication

    Java class file format spec Link: https://docs.oracle.com/javase/specs/jvms/se7/html/jvms-4.html Her ...

  3. Does the OpenSceneGraph have a native file format?

    From OpenSceneGraph-3.0 onwards we have new native file formats based on generic serializers that ar ...

  4. VMWare File Format Learning && Use VHD File To Boot VMWare && CoreOS Docker Configuration And Running

    目录 . Virtual Machine Introduce . Vmware Image File Format . VHD File Format . Convert VHD File Into ...

  5. 配置tomcat连接器后，启动服务报错“No Certificate file specified or invalid file format"异常

    1:原来的配置是 <Connector port="8443" protocol="HTTP/1.1" SSLEnabled="true&quo ...

  6. 配置CAS错误No Certificate file specified or invalid file format

    配置tomcat证书 keystore文件后启动一直报错:(tomcat版本:apache-tomcat-6.0.43) tomcat配置: <Connector port="8443 ...

  7. ShopEx访问提示Incompatible file format: The encoded file has format major ID 2, whereas the Loader expects 4

    今天测试了下ShopEx程序,但是ShopEx安装时(程序放在public_html目录下的test目录中)遇到了问题,提示错误如下:Fatal error: Incompatible file fo ...

  8. 14.8.3 Identifying the File Format in Use 确认使用的文件格式；

    14.8.3 Identifying the File Format in Use 确认使用的文件格式: 如果 你启用一个不同的文件格式使用 innodb_file_format configurat ...

  9. 14.8.2 Verifying File Format Compatibility 校验文件格式兼容性:

    14.8.2 Verifying File Format Compatibility 校验文件格式兼容性: 14.8.2.1 Compatibility Check When InnoDB Is St ...

随机推荐

  1. Linux系统中的日常监控知识点

    1.命令熟悉之w [xiongchao@oc3006745124 Desktop]$ w :: up :, users, load average: 1.48, 1.19, 1.11 USER TTY ...

  2. 用于主题检测的临时日志(452a49c2-4455-430f-a1cc-bbcd2d1944dd - 3bfe001a-32de-4114-a6b4-4005b770f6d7)

    这是一个未删除的临时日志.请手动删除它.(95c74eab-5822-4f4b-b0e5-009feb9cae8d - 3bfe001a-32de-4114-a6b4-4005b770f6d7)

  3. S1 ：数组迭代方法

    ECMAScript 5 还新增了两个归并数组的方法:reduce()和reduceRight().这两个方法都会迭代数组的所有项,然后构建一个最终返回的值.其中,reduce()方法从数组的第一项开 ...

  4. 12个强大的Chrome插件

    Chrome功能强大,也得益于其拥有丰富的扩展资源库.Chrome Web Store里有各种各样的插件,可以满足你使用Chrome时的各种要求.和Firefox一样,Chrome的扩展非常容易安装, ...

  5. Several ports (8005, 8080, 8009) required by Tomcat v7.0 Server at localhost are already in use.

    Several ports (8005, 8080, 8009) required by Tomcat v7.0 Server at localhost are already in use. The ...

  6. POJ 2771 二分图（最大独立集）

    Guardian of Decency Time Limit: 3000MS   Memory Limit: 65536K Total Submissions: 5244   Accepted: 21 ...

  7. 第48套题【tarjan】【图&树的连通性】【并查集】

    Problem 1 图的连通性

  8. C++-bool的值

    /////////////////////////////////////////////////////////////////////////////// // // FileName : boo ...

  9. 第一次使用Git心得体会

    用书本上的概念讲,Git是一个分布式的版本控制工具,每一个Git的工作目录都是一个完全独立的代码库,并拥有完整的历史记录和版本追踪能力,能够不依赖于网络和中心服务器.也就是说Git能够不需要服务器而在 ...

  10. c# 多线程创建 ---简单

    Thread t = new Thread(new ParameterizedThreadStart(UploadCard)); t.IsBackground = false;//后台线程  前台线程 ...