Problem A string is simply an ordered collection of symbols selected from some alphabet and formed into a word; the length of a string is the number of symbols that it contains. An example of a length 21 DNA string (whose alphabet contains the symbol…

Problem A string is simply an ordered collection of symbols selected from some alphabet and formed into a word; the length of a string is the number of symbols that it contains. An example of a length 21 DNA string (whose alphabet contains the symbol…

kmer分析其实是非常耗费计算资源的,如果我们自己写脚本来分析kmer的话,首先要将所有的序列打断成一定长度的kmer,然后将所有的kmer存储起来,最后统计每个kmer出现的频率,或者统计出现指定次数的kmer一共有多少个. 为了节省资源,我们可以使用 Jellyfish 这个现成的软件来分析. JELLYFISH - Fast, Parallel k-mer Counting for DNA Jellyfish mer counter  (原来和MaSuRCA是一个开发单位,我说怎么这么眼熟…

All DNA is composed of a series of nucleotides abbreviated as A, C, G, and T, for example: "ACGAATTCCG". When studying DNA, it is sometimes useful to identify repeated sequences within the DNA. Write a function to find all the 10-letter-long seq…

All DNA is composed of a series of nucleotides abbreviated as A, C, G, and T, for example: "ACGAATTCCG". When studying DNA, it is sometimes useful to identify repeated sequences within the DNA. Write a function to find all the 10-letter-long seq…

Problem Figure 2. The Hamming distance between these two strings is 7. Mismatched symbols are colored red. Given two strings ss and tt of equal length, the Hamming distance between ss and tt, denoted dH(s,t)dH(s,t), is the number of corresponding sym…

All DNA is composed of a series of nucleotides abbreviated as A, C, G, and T, for example: "ACGAATTCCG". When studying DNA, it is sometimes useful to identify repeated sequences within the DNA. Write a function to find all the 10-letter-long seq…

All DNA is composed of a series of nucleotides abbreviated as A, C, G, and T, for example: "ACGAATTCCG". When studying DNA, it is sometimes useful to identify repeated sequences within the DNA. Write a function to find all the 10-letter-long seq…

All DNA is composed of a series of nucleotides abbreviated as A, C, G, and T, for example: "ACGAATTCCG". When studying DNA, it is sometimes useful to identify repeated sequences within the DNA. Write a function to find all the 10-letter-long seq…

All DNA is composed of a series of nucleotides abbreviated as A, C, G, and T, for example: "ACGAATTCCG". When studying DNA, it is sometimes useful to identify repeated sequences within the DNA. Write a function to find all the 10-letter-long seq…