igraph语法简单,画图快速. Cytoscape专业,个性定制. 最终效果图: 当然也可以用Cytoscape来画. 参考:Network visualization with R Cytoscape http://www.360doc.com/content/17/0305/22/19913717_634279918.shtml
https://github.com/Jialab-UCR/GDCRNATools GDCRNATools - An R package for downloading, organizing, and integrative analyzing lncRNA, mRNA, and miRNA data in GDC Introduction The Genomic Data Commons (GDC) maintains standardized genomic, clinical, and
做生物信息,遗传发育,分析数据的时候总是要narrow down分析范围,高通量数据尤其是基因表达,在庞大的confounder面前,缩小分析范围是必须的,否则你会一直在混沌中游荡. 看一篇文章:2018 - Identification of genes associated with Hirschsprung disease, based on whole-genome sequence analysis, and potential effects on enteric nervous s
In recent years, Kernel methods have received major attention, particularly due to the increased popularity of the Support Vector Machines. Kernel functions can be used in many applications as they provide a simple bridge from linearity to non-linear
编码 from __future__ import division def get_aa_percentage(protein, aa_list=['A','I','L','M','F','W','Y','V']): protein = protein.upper() protein_length = len(protein) total = 0 for aa in aa_list: aa = aa.upper() aa_count = protein.count(aa) total += a
Problem To allow for the presence of its varying forms, a protein motif is represented by a shorthand as follows: [XY] means "either X or Y" and {X} means "any amino acid except X." For example, the N-glycosylation motif is written as
Problem The 20 commonly occurring amino acids are abbreviated by using 20 letters from the English alphabet (all letters except for B, J, O, U, X, and Z). Protein strings are constructed from these 20 symbols. Henceforth, the term genetic string will
文献名:Identification of candidate plasma protein biomarkers for cervical cancer using the multiplex proximity extension assay(利用多重邻位延伸分析技术进行宫颈癌血浆蛋白候选生物标记物的鉴定研究) 期刊名:Molecular & Cellular Proteomics 发表时间:2019.04.01 IF:5.232 单位: 1. 乌普萨拉大学 2. 乌普萨
文献名:ComplexBrowser: a tool for identification and quantification of protein complexes in large-scale proteomics datasets(大规模蛋白组学数据集中鉴定和定量蛋白复合物) 期刊名:Mol Cell Proteomics 发表时间:(2019年11月) IF:4.828 单位:南丹麦大学生物化学与分子生物学系和VILLUM生物分析科学中心 物种:人和小鼠 技术:ComplexBrow
文献名:Quantifying Protein-Specific N-Glycome Profiles by Focused Protein and Immunoprecipitation Glycomics(聚焦和糖组学免疫沉淀法定量N-糖图谱) 期刊名:Journal of Proteome Research 发表时间:2019 Aug 2 DOI: 10.1021/acs.jproteome.9b00232 IF: 4.173 单位: 1.日本札幌北海道大学医学研究生院胃肠和肝病学系 2.
本文使用深度神经网络完成计算蛋白质设计去预测20种氨基酸概率. Introduction 针对特定结构和功能的蛋白质进行工程和设计,不仅加深了对蛋白质序列结构关系的理解,而且在化学.生物学和医学等领域都有广泛的应用.在过去的三十年里,蛋白质设计取得了显著的成功,其中一些设计是由计算方法指导的.最近一些成功的计算蛋白设计的例子包括新折叠,酶设计,疫苗,抗体,新的蛋白质组装,配体结合蛋白和膜蛋白. Results Networks architecture, input, and training
文章中文名:在葡聚糖硫酸钠(DSS)诱导下的结肠炎模型伴随着细菌蛋白质丰度和功能的改变 单位: 1 Helmholtz-Centre for Environmental Research - UFZ, Department of Molecular Systems Biology,Leipzig, Germany 2 Fraunhofer Institute for Cell Therapy and Immunology, Department of Therapy Validation, Le
